MBGD SPARQL endpoint
Select SPARQL template
cluster
Basic information of cluster
(ex: 2000)
cluster_go
GO annotation for cluster
(ex: 2000)
cluster_members
Members of cluster
(ex: 2000)
cluster_tree
Cluster in Newick tree format
(ex: 2000)
count_organisms
MBGD default organisms (count)
get_ortholog
Get orthologs in UniProt IDs
(ex: K9Z723)
get_ortholog_from_gene
Get ortholog GO annotation from gene ID
(ex: eco:B0002)
get_ortholog_from_symbol
Get ortholog GO annotation from gene symbol
(ex: rpoB)
list_genes
List genes of a MBGD organism
(ex: eco)
list_genes_with_cluster
Cluster IDs for each gene of
(ex: syn)
list_genomes
List genomes in MBGD
(ex: Complete)
list_organisms_dataset
Selected genomes within taxon range
(ex: tax1117)
list_organisms_default
MBGD default organisms (list)
list_organisms_default_with_count
MBGD default organisms (count for each phylum)
list_organisms_default_with_taxa2
Default organisms list
list_organisms_default_with_taxa3
Default organisms list
list_ortholog_datasets
Ortholog datasets
list_taxid
List of TaxIDs
(ex: 10)
mbgd_draft_in_taxon
MBGD draft genomes
mbgd_genome_in_taxon
MBGD complete genomes in taxon
mbgd_genome_in_taxon_ddbj
MBGD complete genomes in taxon
mbgd_to_eggnog
eggNOG cluster corresponding to cluster
(ex: 2969, 32062, 6390, 4971)
org
Taxonomic hierarchy for
(ex: eco)
organism_genes_in_clusters
Cluster IDs for each gene of
(ex: syn)
organism_to_gene_functions
Cluster IDs for each gene of
(ex: syn)
ortho_goa_from_xref
GO annotation for orthologs of
(ex: uniprot:K9Z723)
ortholog_group_members
Members of cluster
(ex: 2000, default)
ref_org_each_taxon
(ex: extended, defaultOrganism, default, null)
regex_cluster_descr
Search clusters (description regex)
(ex: RNA, polymerase)
regex_go
Regex search fo GO
(ex: photosys)
regex_organisms
Search for organism names (regex)
(ex: Halobacter)
tax2default_org
MBGD default organisms in a specific taxon
tax_img
tax_uri_ancestor_genomes
Genomes above TaxID
(ex: tax:511145, Complete)
tax_uri_genomes
Genomes in a taxonomic range
(ex: tax:1117, Complete)
taxid_uri_ancestors
Taxonomic hierarchy for
(ex: taxid:511145)
uniprot_goa
GO annotation for UniProt IDs
(ex: goa)