MBGD SPARQL endpointSelect SPARQL template
cluster
Description: Basic information of cluster
(ex.
2000)
cluster_go
Description: GO annotation for cluster
(ex.
2000)
cluster_members
Description: Members of cluster
(ex.
2000)
cluster_tree
Description: Cluster in Newick tree format
(ex.
2000)
count_organisms
Description: MBGD default organisms (count)
get_ortholog
Description: Get orthologs in UniProt IDs
(ex.
K9Z723)
get_ortholog_from_gene
Description: Get ortholog GO annotation from gene ID
(ex.
eco:B0002)
get_ortholog_from_symbol
Description: Get ortholog GO annotation from gene symbol
(ex.
rpoB)
list_genes
Description: List genes of a MBGD organism
(ex.
eco)
list_genes_with_cluster
Description: Cluster IDs for each gene of
(ex.
syn)
list_genomes
Description: List genomes in MBGD
(ex.
Complete)
list_organisms_dataset
Description: Selected genomes within taxon range
(ex.
tax1117)
list_organisms_default
Description: MBGD default organisms (list)
list_organisms_default_with_count
Description: MBGD default organisms (count for each phylum)
list_organisms_default_with_taxa2
Description: Default organisms list
list_organisms_default_with_taxa3
Description: Default organisms list
list_ortholog_datasets
Description: Ortholog datasets
list_taxid
Description: List of TaxIDs
(ex.
10)
mbgd_draft_in_taxon
Description: MBGD draft genomes
mbgd_genome_in_taxon
Description: MBGD complete genomes in taxon
mbgd_genome_in_taxon_ddbj
Description: MBGD complete genomes in taxon
mbgd_to_eggnog
Description: eggNOG cluster corresponding to cluster
(ex.
4971)
org
Description: Taxonomic hierarchy for
(ex.
eco)
organism_genes_in_clusters
Description: Cluster IDs for each gene of
(ex.
syn)
organism_to_gene_functions
Description: Cluster IDs for each gene of
(ex.
syn)
ortho_goa_from_xref
Description: GO annotation for orthologs of
(ex.
uniprot:K9Z723)
ortholog_group_members
Description: Members of cluster
(ex.
2000 default)
ref_org_each_taxon
Description: param extended defaultOrganism
(ex.
default null)
regex_cluster_descr
Description: Search clusters (description regex)
(ex.
RNA polymerase)
regex_go
Description: Regex search fo GO
(ex.
photosys)
regex_organisms
Description: Search for organism names (regex)
(ex.
Halobacter)
tax2default_org
Description: MBGD default organisms in a specific taxon
tax_img
tax_uri_ancestor_genomes
Description: Genomes above TaxID
(ex.
tax:511145 Complete)
tax_uri_genomes
Description: Genomes in a taxonomic range
(ex.
tax:1117 Complete)
taxid_uri_ancestors
Description: Taxonomic hierarchy for
(ex.
taxid:511145)
uniprot_goa
Description: GO annotation for UniProt IDs
(ex.
goa)