SPANG >> Library >> MBGD

SPARQL library for MBGD


MBGD SPARQL endpoint

Select SPARQL template

cluster
Basic information of cluster
(ex: 2000)

cluster_go
GO annotation for cluster
(ex: 2000)

cluster_members
Members of cluster
(ex: 2000)

cluster_tree
Cluster in Newick tree format
(ex: 2000)

count_organisms
MBGD default organisms (count)

get_ortholog
Get orthologs in UniProt IDs
(ex: K9Z723)

get_ortholog_from_gene
Get ortholog GO annotation from gene ID
(ex: eco:B0002)

get_ortholog_from_symbol
Get ortholog GO annotation from gene symbol
(ex: rpoB)

list_genes
List genes of a MBGD organism
(ex: eco)

list_genes_with_cluster
Cluster IDs for each gene of
(ex: syn)

list_genomes
List genomes in MBGD
(ex: Complete)

list_organisms_dataset
Selected genomes within taxon range
(ex: tax1117)

list_organisms_default
MBGD default organisms (list)

list_organisms_default_with_count
MBGD default organisms (count for each phylum)

list_organisms_default_with_taxa2
Default organisms list

list_organisms_default_with_taxa3
Default organisms list

list_ortholog_datasets
Ortholog datasets

list_taxid
List of TaxIDs
(ex: 10)

mbgd_draft_in_taxon
MBGD draft genomes

mbgd_genome_in_taxon
MBGD complete genomes in taxon

mbgd_genome_in_taxon_ddbj
MBGD complete genomes in taxon

mbgd_to_eggnog
eggNOG cluster corresponding to cluster
(ex: 2969, 32062, 6390, 4971)

org
Taxonomic hierarchy for
(ex: eco)

organism_genes_in_clusters
Cluster IDs for each gene of
(ex: syn)

organism_to_gene_functions
Cluster IDs for each gene of
(ex: syn)

ortho_goa_from_xref
GO annotation for orthologs of
(ex: uniprot:K9Z723)

ortholog_group_members
Members of cluster
(ex: 2000, default)

ref_org_each_taxon
(ex: extended, defaultOrganism, default, null)

regex_cluster_descr
Search clusters (description regex)
(ex: RNA, polymerase)

regex_go
Regex search fo GO
(ex: photosys)

regex_organisms
Search for organism names (regex)
(ex: Halobacter)

tax2default_org
MBGD default organisms in a specific taxon

tax_img

tax_uri_ancestor_genomes
Genomes above TaxID
(ex: tax:511145, Complete)

tax_uri_genomes
Genomes in a taxonomic range
(ex: tax:1117, Complete)

taxid_uri_ancestors
Taxonomic hierarchy for
(ex: taxid:511145)

uniprot_goa
GO annotation for UniProt IDs
(ex: goa)