SPARQL library for UniProt

UniProt SPARQL endpoint

Select SPARQL template

count_org   
    Description: Count proteins for each organism

filter_by_go   
    Description: Filter UniProt IDs by GO annotation
    (ex. GO_0045202)

filter_by_go_ancestor   
    Description: param GO_0045202

filter_by_go_direct   
    Description: param GO_0045202

function   
    Description: Function annotation
    (ex. K9Z723)

gene   
    Description: From UniProt ID to gene name
    (ex. K9Z723)

go_ratio   
    Description: Set of UniProt IDs to GO annotations with ratio

info   
    Description: param K9Z723

list_disease   

list_go   
    Description: List of GO IDs

list_organism   
    Description: List of organisms associated with UniProt IDs

list_protein_of_org   
    Description: param tax:511145

list_uniprot   
    Description: List of UniProt IDs

search_disease   
    Description: param diabetes

tax2ancestor   
    Description: TaxID to ancestor
    (ex. Phylum)

tax_count_descendants   
    Description: Count TaxIDs under a given TaxID
    (ex. 511145)

tax_uri_ancestors   
    Description: Taxonomic hierarchy for
    (ex. tax:511145)

taxtree_ancestor   
    Description: Higher taxa of a NCBI taxonomy ID (ordered by taxonomic levels; only for Virtuoso)
    (ex. 511145)

uniprot2annot   
    Description: stdin uniprot:K9Z723

uniprot2disease   
    Description: stdin uniprot:P00918

uniprot2disease_annot   
    Description: stdin uniprot:P00918

uniprot2go   

uniprot2go_count   

uniprot2go_count2   

uniprot2go_ratio   

uniprot2go_ratio2   

uniprot_annot   
    Description: Get UniProt annotations
    (ex. P02649)

uniprot_annotation   
    Description: param K9Z723

uniprot_disease   
    Description: param P00918

uniprot_go   
    Description: param Q9Y2J0

uniprot_go_count   

uniprot_go_count_all   

uniprot_go_ratio   

uniprot_xref   
    Description: Get cross-reference from UniProtID to other database
    (ex. PDB)